Staff Scientist (Computational – Connectome) - Genetics job opportunity at WashU.

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WashU Staff Scientist (Computational – Connectome) - Genetics
Experience: 3-years
Pattern: full-time
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Staff scientist

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degreeMaster's (M.Sc.)
loacation On Campus/Onsite locations Washington University Medical Campus, United Kingdom
loacation On Campus/Onsi..........United Kingdom

Job Description Primary Duties & Responsibilities: Following instructions and discussions with the principal investigator, #designs research protocols, including developing procedures for the collection, verification and management of data. #Assists with grant preparation and reporting (writing methods, results, and making figures for papers). Performs complex statistical analysis of #data collected and writes interpretative reports. In collaboration with lab members, writes methods sections and figures for research papers where the analysis is used in the manuscript. Organizes, manages, and curates the data to make it available to the scientific community on public portals. All code should be written by PEP8 standards and of quality to provide it freely available to the community via bitbucket. Organizes the data on the lab cluster according to lab protocols and standards every week (keeping of careful records for sequencing runs and sample names for each project). Backups code on bitbucket and oversees the revision of the code to integrate with other algorithms. Trains on and oversees the formatting and cleaning of the data to make it publicly available according to the requirements of the NIH and NSF and paper journals. Conducts literature searches related to research project (searches literature and identifies code and statistical tools for developing image analysis pipelines, develops new code in python at PEP8 standards for solving problems toward creating neural connectome maps). Algorithm development initially will involve solving problems such as: (1) base calling of in situ nucleotide imaging data; (2) cell segmentation; (3) registration of spots representing nucleotides; (4) drift correction using a fiducial; (5) assembly of counts files of combinatorial barcodes; (6) the interpretation of barcodes as a given neuron in specific x, y, z coordinates. Performs other duties as assigned.

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